PoplarV1, Main, Exploration, bibRecord, 002804

Aldehyde dehydrogenase (ALDH) superfamily in plants: gene nomenclature and comparative genomics.

Identifieur interne : 002804 ( Main/Exploration ); précédent : 002803; suivant : 002805

Aldehyde dehydrogenase (ALDH) superfamily in plants: gene nomenclature and comparative genomics.

Auteurs : Chad Brocker [États-Unis] ; Melpomene Vasiliou ; Sarah Carpenter ; Christopher Carpenter ; Yucheng Zhang ; Xiping Wang ; Simeon O. Kotchoni ; Andrew J. Wood ; Hans-Hubert Kirch ; David Kope N ; Daniel W. Nebert ; Vasilis Vasiliou

Source :

Planta [ 1432-2048 ] ; 2013.

RBID : pubmed:23007552

Descripteurs français

English descriptors

KwdEn :
- Aldehyde Dehydrogenase (genetics), Aldehyde Dehydrogenase (metabolism), Aldehydes (metabolism), Animals (MeSH), Arabidopsis (enzymology), Arabidopsis (genetics), Bryopsida (enzymology), Bryopsida (genetics), Chlamydomonas reinhardtii (enzymology), Chlamydomonas reinhardtii (genetics), Chromosome Mapping (MeSH), Chromosomes, Plant (genetics), Evolution, Molecular (MeSH), Genome, Plant (genetics), Genomics (methods), Multigene Family (MeSH), Oryza (enzymology), Oryza (genetics), Plant Proteins (genetics), Plant Proteins (metabolism), Plants (classification), Plants (enzymology), Plants (genetics), Populus (enzymology), Populus (genetics), Selaginellaceae (enzymology), Selaginellaceae (genetics), Sorghum (enzymology), Sorghum (genetics), Terminology as Topic (MeSH), Vitis (enzymology), Vitis (genetics), Volvox (enzymology), Volvox (genetics), Zea mays (enzymology), Zea mays (genetics).
MESH :
- chemical , genetics : Aldehyde Dehydrogenase, Plant Proteins.
- chemical , metabolism : Aldehyde Dehydrogenase, Aldehydes, Plant Proteins.
- classification : Plants.
- enzymology : Arabidopsis, Bryopsida, Chlamydomonas reinhardtii, Oryza, Plants, Populus, Selaginellaceae, Sorghum, Vitis, Volvox, Zea mays.
- genetics : Arabidopsis, Bryopsida, Chlamydomonas reinhardtii, Chromosomes, Plant, Genome, Plant, Oryza, Plants, Populus, Selaginellaceae, Sorghum, Vitis, Volvox, Zea mays.
- methods : Genomics.
- Animals, Chromosome Mapping, Evolution, Molecular, Multigene Family, Terminology as Topic.

Abstract

In recent years, there has been a significant increase in the number of completely sequenced plant genomes. The comparison of fully sequenced genomes allows for identification of new gene family members, as well as comprehensive analysis of gene family evolution. The aldehyde dehydrogenase (ALDH) gene superfamily comprises a group of enzymes involved in the NAD(+)- or NADP(+)-dependent conversion of various aldehydes to their corresponding carboxylic acids. ALDH enzymes are involved in processing many aldehydes that serve as biogenic intermediates in a wide range of metabolic pathways. In addition, many of these enzymes function as 'aldehyde scavengers' by removing reactive aldehydes generated during the oxidative degradation of lipid membranes, also known as lipid peroxidation. Plants and animals share many ALDH families, and many genes are highly conserved between these two evolutionarily distinct groups. Conversely, both plants and animals also contain unique ALDH genes and families. Herein we carried out genome-wide identification of ALDH genes in a number of plant species-including Arabidopsis thaliana (thale crest), Chlamydomonas reinhardtii (unicellular algae), Oryza sativa (rice), Physcomitrella patens (moss), Vitis vinifera (grapevine) and Zea mays (maize). These data were then combined with previous analysis of Populus trichocarpa (poplar tree), Selaginella moellindorffii (gemmiferous spikemoss), Sorghum bicolor (sorghum) and Volvox carteri (colonial algae) for a comprehensive evolutionary comparison of the plant ALDH superfamily. As a result, newly identified genes can be more easily analyzed and gene names can be assigned according to current nomenclature guidelines; our goal is to clarify previously confusing and conflicting names and classifications that might confound results and prevent accurate comparisons between studies.

DOI: 10.1007/s00425-012-1749-0
PubMed: 23007552
PubMed Central: PMC3536936

Affiliations:

Links toward previous steps (curation, corpus...)

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Le document en format XML

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<term>Aldehyde Dehydrogenase (metabolism)</term>
<term>Aldehydes (metabolism)</term>
<term>Animals (MeSH)</term>
<term>Arabidopsis (enzymology)</term>
<term>Arabidopsis (genetics)</term>
<term>Bryopsida (enzymology)</term>
<term>Bryopsida (genetics)</term>
<term>Chlamydomonas reinhardtii (enzymology)</term>
<term>Chlamydomonas reinhardtii (genetics)</term>
<term>Chromosome Mapping (MeSH)</term>
<term>Chromosomes, Plant (genetics)</term>
<term>Evolution, Molecular (MeSH)</term>
<term>Genome, Plant (genetics)</term>
<term>Genomics (methods)</term>
<term>Multigene Family (MeSH)</term>
<term>Oryza (enzymology)</term>
<term>Oryza (genetics)</term>
<term>Plant Proteins (genetics)</term>
<term>Plant Proteins (metabolism)</term>
<term>Plants (classification)</term>
<term>Plants (enzymology)</term>
<term>Plants (genetics)</term>
<term>Populus (enzymology)</term>
<term>Populus (genetics)</term>
<term>Selaginellaceae (enzymology)</term>
<term>Selaginellaceae (genetics)</term>
<term>Sorghum (enzymology)</term>
<term>Sorghum (genetics)</term>
<term>Terminology as Topic (MeSH)</term>
<term>Vitis (enzymology)</term>
<term>Vitis (genetics)</term>
<term>Volvox (enzymology)</term>
<term>Volvox (genetics)</term>
<term>Zea mays (enzymology)</term>
<term>Zea mays (genetics)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Aldehyde dehydrogenase (génétique)</term>
<term>Aldehyde dehydrogenase (métabolisme)</term>
<term>Aldéhydes (métabolisme)</term>
<term>Animaux (MeSH)</term>
<term>Arabidopsis (enzymologie)</term>
<term>Arabidopsis (génétique)</term>
<term>Bryopsida (enzymologie)</term>
<term>Bryopsida (génétique)</term>
<term>Cartographie chromosomique (MeSH)</term>
<term>Chlamydomonas reinhardtii (enzymologie)</term>
<term>Chlamydomonas reinhardtii (génétique)</term>
<term>Chromosomes de plante (génétique)</term>
<term>Famille multigénique (MeSH)</term>
<term>Génome végétal (génétique)</term>
<term>Génomique (méthodes)</term>
<term>Oryza (enzymologie)</term>
<term>Oryza (génétique)</term>
<term>Plantes (classification)</term>
<term>Plantes (enzymologie)</term>
<term>Plantes (génétique)</term>
<term>Populus (enzymologie)</term>
<term>Populus (génétique)</term>
<term>Protéines végétales (génétique)</term>
<term>Protéines végétales (métabolisme)</term>
<term>Selaginellaceae (enzymologie)</term>
<term>Selaginellaceae (génétique)</term>
<term>Sorghum (enzymologie)</term>
<term>Sorghum (génétique)</term>
<term>Terminologie comme sujet (MeSH)</term>
<term>Vitis (enzymologie)</term>
<term>Vitis (génétique)</term>
<term>Volvox (enzymologie)</term>
<term>Volvox (génétique)</term>
<term>Zea mays (enzymologie)</term>
<term>Zea mays (génétique)</term>
<term>Évolution moléculaire (MeSH)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Aldehyde Dehydrogenase</term>
<term>Plant Proteins</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Aldehyde Dehydrogenase</term>
<term>Aldehydes</term>
<term>Plant Proteins</term>
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<keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Plants</term>
</keywords>
<keywords scheme="MESH" qualifier="enzymologie" xml:lang="fr"><term>Arabidopsis</term>
<term>Bryopsida</term>
<term>Chlamydomonas reinhardtii</term>
<term>Oryza</term>
<term>Plantes</term>
<term>Populus</term>
<term>Selaginellaceae</term>
<term>Sorghum</term>
<term>Vitis</term>
<term>Volvox</term>
<term>Zea mays</term>
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<keywords scheme="MESH" qualifier="enzymology" xml:lang="en"><term>Arabidopsis</term>
<term>Bryopsida</term>
<term>Chlamydomonas reinhardtii</term>
<term>Oryza</term>
<term>Plants</term>
<term>Populus</term>
<term>Selaginellaceae</term>
<term>Sorghum</term>
<term>Vitis</term>
<term>Volvox</term>
<term>Zea mays</term>
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<term>Bryopsida</term>
<term>Chlamydomonas reinhardtii</term>
<term>Chromosomes, Plant</term>
<term>Genome, Plant</term>
<term>Oryza</term>
<term>Plants</term>
<term>Populus</term>
<term>Selaginellaceae</term>
<term>Sorghum</term>
<term>Vitis</term>
<term>Volvox</term>
<term>Zea mays</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Aldehyde dehydrogenase</term>
<term>Arabidopsis</term>
<term>Bryopsida</term>
<term>Chlamydomonas reinhardtii</term>
<term>Chromosomes de plante</term>
<term>Génome végétal</term>
<term>Oryza</term>
<term>Plantes</term>
<term>Populus</term>
<term>Protéines végétales</term>
<term>Selaginellaceae</term>
<term>Sorghum</term>
<term>Vitis</term>
<term>Volvox</term>
<term>Zea mays</term>
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<keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Genomics</term>
</keywords>
<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Aldehyde dehydrogenase</term>
<term>Aldéhydes</term>
<term>Protéines végétales</term>
</keywords>
<keywords scheme="MESH" qualifier="méthodes" xml:lang="fr"><term>Génomique</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Animals</term>
<term>Chromosome Mapping</term>
<term>Evolution, Molecular</term>
<term>Multigene Family</term>
<term>Terminology as Topic</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Animaux</term>
<term>Cartographie chromosomique</term>
<term>Famille multigénique</term>
<term>Terminologie comme sujet</term>
<term>Évolution moléculaire</term>
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<front><div type="abstract" xml:lang="en">In recent years, there has been a significant increase in the number of completely sequenced plant genomes. The comparison of fully sequenced genomes allows for identification of new gene family members, as well as comprehensive analysis of gene family evolution. The aldehyde dehydrogenase (ALDH) gene superfamily comprises a group of enzymes involved in the NAD(+)- or NADP(+)-dependent conversion of various aldehydes to their corresponding carboxylic acids. ALDH enzymes are involved in processing many aldehydes that serve as biogenic intermediates in a wide range of metabolic pathways. In addition, many of these enzymes function as 'aldehyde scavengers' by removing reactive aldehydes generated during the oxidative degradation of lipid membranes, also known as lipid peroxidation. Plants and animals share many ALDH families, and many genes are highly conserved between these two evolutionarily distinct groups. Conversely, both plants and animals also contain unique ALDH genes and families. Herein we carried out genome-wide identification of ALDH genes in a number of plant species-including Arabidopsis thaliana (thale crest), Chlamydomonas reinhardtii (unicellular algae), Oryza sativa (rice), Physcomitrella patens (moss), Vitis vinifera (grapevine) and Zea mays (maize). These data were then combined with previous analysis of Populus trichocarpa (poplar tree), Selaginella moellindorffii (gemmiferous spikemoss), Sorghum bicolor (sorghum) and Volvox carteri (colonial algae) for a comprehensive evolutionary comparison of the plant ALDH superfamily. As a result, newly identified genes can be more easily analyzed and gene names can be assigned according to current nomenclature guidelines; our goal is to clarify previously confusing and conflicting names and classifications that might confound results and prevent accurate comparisons between studies.</div>
</front>
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<Abstract><AbstractText>In recent years, there has been a significant increase in the number of completely sequenced plant genomes. The comparison of fully sequenced genomes allows for identification of new gene family members, as well as comprehensive analysis of gene family evolution. The aldehyde dehydrogenase (ALDH) gene superfamily comprises a group of enzymes involved in the NAD(+)- or NADP(+)-dependent conversion of various aldehydes to their corresponding carboxylic acids. ALDH enzymes are involved in processing many aldehydes that serve as biogenic intermediates in a wide range of metabolic pathways. In addition, many of these enzymes function as 'aldehyde scavengers' by removing reactive aldehydes generated during the oxidative degradation of lipid membranes, also known as lipid peroxidation. Plants and animals share many ALDH families, and many genes are highly conserved between these two evolutionarily distinct groups. Conversely, both plants and animals also contain unique ALDH genes and families. Herein we carried out genome-wide identification of ALDH genes in a number of plant species-including Arabidopsis thaliana (thale crest), Chlamydomonas reinhardtii (unicellular algae), Oryza sativa (rice), Physcomitrella patens (moss), Vitis vinifera (grapevine) and Zea mays (maize). These data were then combined with previous analysis of Populus trichocarpa (poplar tree), Selaginella moellindorffii (gemmiferous spikemoss), Sorghum bicolor (sorghum) and Volvox carteri (colonial algae) for a comprehensive evolutionary comparison of the plant ALDH superfamily. As a result, newly identified genes can be more easily analyzed and gene names can be assigned according to current nomenclature guidelines; our goal is to clarify previously confusing and conflicting names and classifications that might confound results and prevent accurate comparisons between studies.</AbstractText>
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<Initials>C</Initials>
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Aldehyde dehydrogenase (ALDH) superfamily in plants: gene nomenclature and comparative genomics.

Aldehyde dehydrogenase (ALDH) superfamily in plants: gene nomenclature and comparative genomics.

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